Base game
- Meet with annihilation Kill all foot soldiers and enemy trucks on a Meet With Enemy sequence. 24.1%Rare
- The Emperor's New Clothes Obtain the Shin Guards, the Bulletproof Vest and the Helmet. 9.5%Very rare
- Private Arsenal Obtain every weapon and weapon upgrade. 6.3%Very rare
- Faster Than a Speeding Bullet Block 100 projectiles using the claw. 7.4%Very rare
- One Dozen Yashichis Collect all twelve hidden Yashichis - one from each of Area 01 - 12. 5.5%Very rare
- Clean as a whistle Clear Area 02 without touching a slime blob. 6.2%Very rare
- Pacifist Pride Clear any of Area 1 - 12 without firing your gun. 6.6%Very rare
- Cat burglar Get to the boss of Area 05 within one minute and thirty seconds. 5%Ultra rare
- A Real Challenge Acquire at least one star in each of the Challenge Rooms 1 - 56. 3.4%Ultra rare
- H4><0rz Hack through all the hacking games on Hard. 3.5%Ultra rare
- Intel Collector Acquire all database logs. 4.8%Ultra rare
- Elite Commando Clear the game on Super Hard. 3.2%Ultra rare
Trophy names, descriptions and rarity come from PlayStation. Guides open on their authors' own websites.